emLab SOP

Files

Where things live and how they’re organized.

• Google Shared Drive
• GRIT Data Storage Space
• GitHub Structure

Data

Naming, formats, metadata, and confidentiality.

• Data File Naming
• Metadata
• Accessing emLab Data in R
• Tidy Data
• Data Formats
• Data Use Agreements and Confidential Data

Code

Style, documentation, and reproducibility.

• Code Styling
• Code Documentation
• Exploratory Data Analysis
• Package Reproducibility
• Pipeline Reproducibility
• Code Review

Quarto

Authoring reproducible documents and websites.

• Chunk Best Practices
• Figures, Tables, and References
• Citations and Bibliography
• Caching
• Using R targets
• Publishing
• Presentations

Servers

Running jobs on Sequoia and Quebracho.

• Resources and Software
• Getting Set Up
• Using Sequoia
• Using Quebracho
• Best Practices
• Accessing Data
• Accessing Code

Publications

Authorship, reports, and sharing outputs.

• Affiliation and Authorship
• Reports
• Publishing Data
• Public GitHub Repository
• Sharing on Website